#853: Updating Doxygen configuration to resolve compatibility problems.

1 files changed, 131 insertions, 64 deletions

diff --git a/installer/ogGenerateDoc.sh b/installer/ogGenerateDoc.sh
index 62839ef2..01dbdea2 100755
--- a/installer/ogGenerateDoc.sh
+++ b/installer/ogGenerateDoc.sh
@@ -25,18 +25,19 @@ PROJECT=${PROJECT:-"OpenGnsys"}
 VERSION=$(jq '.version+" "+.codename' $(dirname "$0")/../doc/VERSION.json) 2>/dev/null
 VERSION=${VERSION:-"1.1.1"}
 cat > /tmp/doxyfile << EOF
-# Doxyfile 1.5.6
-# Fichero para documentar codigo shellscripts linux.
-# Proyecto OpenGnsys
+# Doxyfile 1.8.13
+
 #---------------------------------------------------------------------------
 # Project related configuration options
 #---------------------------------------------------------------------------
 DOXYFILE_ENCODING      = UTF-8
 PROJECT_NAME           = $PROJECT
 PROJECT_NUMBER         = $VERSION
-OUTPUT_DIRECTORY       = $2
+PROJECT_BRIEF          =
 PROJECT_LOGO           = $(dirname "$0")/../doc/opengnsys-logo.png
+OUTPUT_DIRECTORY       = $2
 CREATE_SUBDIRS         = NO
+ALLOW_UNICODE_NAMES    = NO
 OUTPUT_LANGUAGE        = Spanish
 BRIEF_MEMBER_DESC      = YES
 REPEAT_BRIEF           = YES
@@ -60,27 +61,36 @@ SHORT_NAMES            = NO
 JAVADOC_AUTOBRIEF      = NO
 QT_AUTOBRIEF           = NO
 MULTILINE_CPP_IS_BRIEF = NO
-DETAILS_AT_TOP         = NO
 INHERIT_DOCS           = YES
 SEPARATE_MEMBER_PAGES  = NO
-TAB_SIZE               = 8
+TAB_SIZE               = 4
 ALIASES                =
+TCL_SUBST              =
 OPTIMIZE_OUTPUT_FOR_C  = YES
 OPTIMIZE_OUTPUT_JAVA   = NO
-OPTIMIZE_FOR_FORTRAN   = YES
+OPTIMIZE_FOR_FORTRAN   = NO
 OPTIMIZE_OUTPUT_VHDL   = NO
+EXTENSION_MAPPING      = lib=c
+MARKDOWN_SUPPORT       = YES
+TOC_INCLUDE_HEADINGS   = 0
+AUTOLINK_SUPPORT       = YES
 BUILTIN_STL_SUPPORT    = NO
 CPP_CLI_SUPPORT        = NO
 SIP_SUPPORT            = NO
 IDL_PROPERTY_SUPPORT   = YES
 DISTRIBUTE_GROUP_DOC   = NO
+GROUP_NESTED_COMPOUNDS = NO
 SUBGROUPING            = YES
+INLINE_GROUPED_CLASSES = NO
+INLINE_SIMPLE_STRUCTS  = NO
 TYPEDEF_HIDES_STRUCT   = NO
+LOOKUP_CACHE_SIZE      = 0
 #---------------------------------------------------------------------------
 # Build related configuration options
 #---------------------------------------------------------------------------
 EXTRACT_ALL            = YES
 EXTRACT_PRIVATE        = YES
+EXTRACT_PACKAGE        = NO
 EXTRACT_STATIC         = YES
 EXTRACT_LOCAL_CLASSES  = YES
 EXTRACT_LOCAL_METHODS  = NO
@@ -92,12 +102,17 @@ HIDE_IN_BODY_DOCS      = NO
 INTERNAL_DOCS          = NO
 CASE_SENSE_NAMES       = YES
 HIDE_SCOPE_NAMES       = NO
+HIDE_COMPOUND_REFERENCE= NO
 SHOW_INCLUDE_FILES     = YES
+SHOW_GROUPED_MEMB_INC  = NO
+FORCE_LOCAL_INCLUDES   = NO
 INLINE_INFO            = YES
 SORT_MEMBER_DOCS       = YES
 SORT_BRIEF_DOCS        = NO
+SORT_MEMBERS_CTORS_1ST = NO
 SORT_GROUP_NAMES       = NO
 SORT_BY_SCOPE_NAME     = NO
+STRICT_PROTO_MATCHING  = NO
 GENERATE_TODOLIST      = YES
 GENERATE_TESTLIST      = YES
 GENERATE_BUGLIST       = YES
@@ -105,22 +120,24 @@ GENERATE_DEPRECATEDLIST= YES
 ENABLED_SECTIONS       =
 MAX_INITIALIZER_LINES  = 30
 SHOW_USED_FILES        = YES
-SHOW_DIRECTORIES       = NO
 SHOW_FILES             = YES
 SHOW_NAMESPACES        = YES
 FILE_VERSION_FILTER    =
+LAYOUT_FILE            =
+CITE_BIB_FILES         =
 #---------------------------------------------------------------------------
-# configuration options related to warning and progress messages
+# Configuration options related to warning and progress messages
 #---------------------------------------------------------------------------
 QUIET                  = NO
 WARNINGS               = YES
 WARN_IF_UNDOCUMENTED   = YES
 WARN_IF_DOC_ERROR      = YES
 WARN_NO_PARAMDOC       = NO
+WARN_AS_ERROR          = NO
 WARN_FORMAT            = "$file:$line: $text"
 WARN_LOGFILE           =
 #---------------------------------------------------------------------------
-# configuration options related to the input files
+# Configuration options related to the input files
 #---------------------------------------------------------------------------
 INPUT                  = $1
 INPUT_ENCODING         = UTF-8
@@ -129,51 +146,45 @@ FILE_PATTERNS          = *.c \
                          *.cxx \
                          *.cpp \
                          *.c++ \
-                         *.d \
                          *.java \
                          *.ii \
                          *.ixx \
                          *.ipp \
                          *.i++ \
                          *.inl \
+                         *.idl \
+                         *.ddl \
+                         *.odl \
                          *.h \
                          *.hh \
                          *.hxx \
                          *.hpp \
                          *.h++ \
-                         *.idl \
-                         *.odl \
                          *.cs \
+                         *.d \
                          *.php \
-                         *.php3 \
+                         *.php4 \
+                         *.php5 \
+                         *.phtml \
                          *.inc \
                          *.m \
+                         *.markdown \
+                         *.md \
                          *.mm \
                          *.dox \
                          *.py \
+                         *.pyw \
                          *.f90 \
+                         *.f95 \
+                         *.f03 \
+                         *.f08 \
                          *.f \
+                         *.for \
+                         *.tcl \
                          *.vhd \
                          *.vhdl \
-                         *.C \
-                         *.CC \
-                         *.C++ \
-                         *.II \
-                         *.I++ \
-                         *.H \
-                         *.HH \
-                         *.H++ \
-                         *.CS \
-                         *.PHP \
-                         *.PHP3 \
-                         *.M \
-                         *.MM \
-                         *.PY \
-                         *.F90 \
-                         *.F \
-                         *.VHD \
-                         *.VHDL \
-                         *.lib \
+                         *.ucf \
+                         *.qsf \
                          *.lib
 RECURSIVE              = YES
 EXCLUDE                =
@@ -187,8 +198,10 @@ IMAGE_PATH             =
 INPUT_FILTER           =
 FILTER_PATTERNS        =
 FILTER_SOURCE_FILES    = NO
+FILTER_SOURCE_PATTERNS =
+USE_MDFILE_AS_MAINPAGE =
 #---------------------------------------------------------------------------
-# configuration options related to source browsing
+# Configuration options related to source browsing
 #---------------------------------------------------------------------------
 SOURCE_BROWSER         = YES
 INLINE_SOURCES         = NO
@@ -196,16 +209,19 @@ STRIP_CODE_COMMENTS    = YES
 REFERENCED_BY_RELATION = YES
 REFERENCES_RELATION    = YES
 REFERENCES_LINK_SOURCE = YES
+SOURCE_TOOLTIPS        = YES
 USE_HTAGS              = NO
 VERBATIM_HEADERS       = YES
+CLANG_ASSISTED_PARSING = NO
+CLANG_OPTIONS          =
 #---------------------------------------------------------------------------
-# configuration options related to the alphabetical class index
+# Configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
-ALPHABETICAL_INDEX     = NO
+ALPHABETICAL_INDEX     = YES
 COLS_IN_ALPHA_INDEX    = 5
 IGNORE_PREFIX          =
 #---------------------------------------------------------------------------
-# configuration options related to the HTML output
+# Configuration options related to the HTML output
 #---------------------------------------------------------------------------
 GENERATE_HTML          = YES
 HTML_OUTPUT            = html
@@ -213,68 +229,112 @@ HTML_FILE_EXTENSION    = .html
 HTML_HEADER            =
 HTML_FOOTER            =
 HTML_STYLESHEET        =
-HTML_ALIGN_MEMBERS     = YES
-GENERATE_HTMLHELP      = NO
+HTML_EXTRA_STYLESHEET  =
+HTML_EXTRA_FILES       =
+HTML_COLORSTYLE_HUE    = 220
+HTML_COLORSTYLE_SAT    = 100
+HTML_COLORSTYLE_GAMMA  = 80
+HTML_TIMESTAMP         = NO
+HTML_DYNAMIC_SECTIONS  = NO
+HTML_INDEX_NUM_ENTRIES = 100
 GENERATE_DOCSET        = NO
 DOCSET_FEEDNAME        = "Doxygen generated docs"
 DOCSET_BUNDLE_ID       = org.doxygen.Project
-HTML_DYNAMIC_SECTIONS  = NO
+DOCSET_PUBLISHER_ID    = org.doxygen.Publisher
+DOCSET_PUBLISHER_NAME  = Publisher
+GENERATE_HTMLHELP      = NO
 CHM_FILE               =
 HHC_LOCATION           =
 GENERATE_CHI           = NO
 CHM_INDEX_ENCODING     =
 BINARY_TOC             = NO
 TOC_EXPAND             = NO
+GENERATE_QHP           = NO
+QCH_FILE               =
+QHP_NAMESPACE          = org.doxygen.Project
+QHP_VIRTUAL_FOLDER     = doc
+QHP_CUST_FILTER_NAME   =
+QHP_CUST_FILTER_ATTRS  =
+QHP_SECT_FILTER_ATTRS  =
+QHG_LOCATION           =
+GENERATE_ECLIPSEHELP   = NO
+ECLIPSE_DOC_ID         = org.doxygen.Project
 DISABLE_INDEX          = NO
+GENERATE_TREEVIEW      = NO
 ENUM_VALUES_PER_LINE   = 4
-GENERATE_TREEVIEW      = ALL
 TREEVIEW_WIDTH         = 250
+EXT_LINKS_IN_WINDOW    = NO
 FORMULA_FONTSIZE       = 10
-#---------------------------------------------------------------------------
-# configuration options related to the LaTeX output
+FORMULA_TRANSPARENT    = YES
+USE_MATHJAX            = NO
+MATHJAX_FORMAT         = HTML-CSS
+MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
+MATHJAX_EXTENSIONS     =
+MATHJAX_CODEFILE       =
+SEARCHENGINE           = YES
+SERVER_BASED_SEARCH    = NO
+EXTERNAL_SEARCH        = NO
+SEARCHENGINE_URL       =
+SEARCHDATA_FILE        = searchdata.xml
+EXTERNAL_SEARCH_ID     =
+EXTRA_SEARCH_MAPPINGS  =
+#---------------------------------------------------------------------------
+# Configuration options related to the LaTeX output
 #---------------------------------------------------------------------------
 GENERATE_LATEX         = NO
 LATEX_OUTPUT           = latex
 LATEX_CMD_NAME         = latex
 MAKEINDEX_CMD_NAME     = makeindex
 COMPACT_LATEX          = NO
-PAPER_TYPE             = a4wide
+PAPER_TYPE             = a4
 EXTRA_PACKAGES         =
 LATEX_HEADER           =
+LATEX_FOOTER           =
+LATEX_EXTRA_STYLESHEET =
+LATEX_EXTRA_FILES      =
 PDF_HYPERLINKS         = YES
 USE_PDFLATEX           = YES
 LATEX_BATCHMODE        = NO
 LATEX_HIDE_INDICES     = NO
+LATEX_SOURCE_CODE      = NO
+LATEX_BIB_STYLE        = plain
+LATEX_TIMESTAMP        = NO
 #---------------------------------------------------------------------------
-# configuration options related to the RTF output
+# Configuration options related to the RTF output
 #---------------------------------------------------------------------------
 GENERATE_RTF           = NO
 RTF_OUTPUT             = rtf
-COMPACT_RTF            = YES
-RTF_HYPERLINKS         = YES
+COMPACT_RTF            = NO
+RTF_HYPERLINKS         = NO
 RTF_STYLESHEET_FILE    =
 RTF_EXTENSIONS_FILE    =
+RTF_SOURCE_CODE        = NO
 #---------------------------------------------------------------------------
-# configuration options related to the man page output
+# Configuration options related to the man page output
 #---------------------------------------------------------------------------
 GENERATE_MAN           = NO
 MAN_OUTPUT             = man
 MAN_EXTENSION          = .3
-MAN_LINKS              = YES
+MAN_SUBDIR             =
+MAN_LINKS              = NO
 #---------------------------------------------------------------------------
-# configuration options related to the XML output
+# Configuration options related to the XML output
 #---------------------------------------------------------------------------
 GENERATE_XML           = NO
 XML_OUTPUT             = xml
-XML_SCHEMA             =
-XML_DTD                =
 XML_PROGRAMLISTING     = YES
 #---------------------------------------------------------------------------
-# configuration options for the AutoGen Definitions output
+# Configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+GENERATE_DOCBOOK       = NO
+DOCBOOK_OUTPUT         = docbook
+DOCBOOK_PROGRAMLISTING = NO
+#---------------------------------------------------------------------------
+# Configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
 GENERATE_AUTOGEN_DEF   = NO
 #---------------------------------------------------------------------------
-# configuration options related to the Perl module output
+# Configuration options related to the Perl module output
 #---------------------------------------------------------------------------
 GENERATE_PERLMOD       = NO
 PERLMOD_LATEX          = NO
@@ -284,7 +344,7 @@ PERLMOD_MAKEVAR_PREFIX =
 # Configuration options related to the preprocessor
 #---------------------------------------------------------------------------
 ENABLE_PREPROCESSING   = YES
-MACRO_EXPANSION        = YES
+MACRO_EXPANSION        = NO
 EXPAND_ONLY_PREDEF     = NO
 SEARCH_INCLUDES        = YES
 INCLUDE_PATH           =
@@ -293,26 +353,31 @@ PREDEFINED             =
 EXPAND_AS_DEFINED      =
 SKIP_FUNCTION_MACROS   = YES
 #---------------------------------------------------------------------------
-# Configuration::additions related to external references
+# Configuration options related to external references
 #---------------------------------------------------------------------------
 TAGFILES               =
 GENERATE_TAGFILE       =
 ALLEXTERNALS           = NO
 EXTERNAL_GROUPS        = YES
+EXTERNAL_PAGES         = YES
 PERL_PATH              = /usr/bin/perl
 #---------------------------------------------------------------------------
 # Configuration options related to the dot tool
 #---------------------------------------------------------------------------
-CLASS_DIAGRAMS         = NO
+CLASS_DIAGRAMS         = YES
 MSCGEN_PATH            =
+DIA_PATH               =
 HIDE_UNDOC_RELATIONS   = YES
 HAVE_DOT               = YES
+DOT_NUM_THREADS        = 0
 DOT_FONTNAME           = FreeSans
+DOT_FONTSIZE           = 10
 DOT_FONTPATH           =
 CLASS_GRAPH            = YES
 COLLABORATION_GRAPH    = YES
 GROUP_GRAPHS           = YES
 UML_LOOK               = NO
+UML_LIMIT_NUM_FIELDS   = 10
 TEMPLATE_RELATIONS     = NO
 INCLUDE_GRAPH          = YES
 INCLUDED_BY_GRAPH      = YES
@@ -321,18 +386,20 @@ CALLER_GRAPH           = NO
 GRAPHICAL_HIERARCHY    = YES
 DIRECTORY_GRAPH        = YES
 DOT_IMAGE_FORMAT       = png
+INTERACTIVE_SVG        = NO
 DOT_PATH               =
 DOTFILE_DIRS           =
-DOT_GRAPH_MAX_NODES    = 20
-MAX_DOT_GRAPH_DEPTH    = 2
-DOT_TRANSPARENT        = YES
+MSCFILE_DIRS           =
+DIAFILE_DIRS           =
+PLANTUML_JAR_PATH      =
+PLANTUML_CFG_FILE      =
+PLANTUML_INCLUDE_PATH  =
+DOT_GRAPH_MAX_NODES    = 50
+MAX_DOT_GRAPH_DEPTH    = 0
+DOT_TRANSPARENT        = NO
 DOT_MULTI_TARGETS      = NO
 GENERATE_LEGEND        = YES
 DOT_CLEANUP            = YES
-#---------------------------------------------------------------------------
-# Configuration::additions related to the search engine
-#---------------------------------------------------------------------------
-SEARCHENGINE           = NO
 EOF
 
 doxygen /tmp/doxyfile